Aperture Neuro

Objectives. Radiomics pipelines extract hundreds of quantitative features that are widely known to be redundant, but the structure of this redundancy is usually treated as a per-dataset nuisance to be pruned away. We tested the alternative hypothesis that a substantial number of feature-feature correlations are universal: they persist across patients and across anatomically distinct structures because they reflect shared mathematical and image-statistical properties of how the image is summarised, rather than properties of the tissue being imaged. Materials and Methods. We re-analysed the publicly available Radiomics Atlas Dataset of normal Abdominal and Pelvic CT (RADAPT), restricting the analysis to the 526 non-contrast-enhanced examinations of the 531-subject atlas and to the 107 original (non-filtered) PyRadiomics features. The 53 segmented structures were grouped into four broad anatomical categories -- bones, muscles, vessels, and parenchymal organs. RADAPT is distributed as one Excel file per structure, with patients as rows and features as columns. Within each structure file we z-score-normalised every feature across patients, computed the absolute Spearman correlation matrix, and retained edges with |{rho}| [≥] {tau} for {tau} in {0.70, 0.80, 0.90}. We then intersected the edge sets across all structure files to obtain a "universal" correlation graph, in which an edge survives only if it exceeds the threshold in every structure (each estimated across the full patient sample). Stable feature communities were defined as the maximal cliques of this graph. Robustness to patient sampling was tested by repeating the entire pipeline on five independent random splits of each file into two patient halves (10 sub-cohorts per threshold), and the implementation was independently reproduced in R. Results. Despite the strictness of the global-intersection criterion, 34, 24, and 14 stable feature communities survived at {tau} = 0.70, 0.80, and 0.90 respectively, with the largest cliques containing six members at {tau} = 0.70 and {tau} = 0.80 and five members at {tau} = 0.90. The community structure was clearly interpretable: separate cliques captured (i) variance-like intensity dispersion, (ii) long-run / low-frequency (coarse) texture, (iii) high gray-level texture, (iv) low gray-level texture, (v) volume and surface shape, and (vi) local-homogeneity and energy/entropy duals. On random-half resampling the exact-match recovery rate of these communities was 81.5 %, 86.7 %, and 80.7 % across the three thresholds; departures from exact recovery were almost always a single boundary feature added or dropped, consistent with finite-sample fluctuation of near-threshold edges rather than structural instability. The R re-implementation reproduced the Python results exactly. Conclusion. A substantial portion of radiomics feature collinearity is universal across patients and tissues. We distinguish two layers within it: trivial near-algebraic duals that are universal by construction, and non-trivial cross-matrix-family communities that are the genuine empirical finding. Together they provide an interpretable, definition-grounded basis for aggressive dimensionality reduction, for retrospectively reconciling apparently different feature selections in the literature, and for moving radiomics pipelines toward organ-agnostic, more reproducible models. Clinical relevance statement. Selecting a single representative feature from each universal community shrinks the original-feature space by roughly an order of magnitude without sacrificing biologically distinct information. For example, the five variance-family members (first-order Variance, GLCM SumSquares, GLCM ClusterTendency, GLDM and GLRLM GrayLevelVariance) can be replaced by a single representative, removing redundant degrees of freedom that would otherwise inflate model variance; and labelling each retained feature by its community lets two studies that selected different variance-family names be recognised as having found the same signal, simplifying model development and improving cross-cohort generalisability in clinical CT workflows.

Mapping hierarchical brain networks within traditional Euclidean space causes significant structural distortion, undermining neuroimaging diagnostic frameworks. While hyperbolic models like the Poincare ball preserve these nested topologies, they demand heavy computational overhead due to intricate Mobius operations and curved geodesics. This paper introduces a highly efficient non-Euclidean framework for analyzing neurocognitive decline utilizing the Beltrami-Klein ball model. By projecting hyperbolic geodesics as Euclidean straight lines, this approach converts complex distance calculations into simple dot products, radically reducing processing demands. We validated our methodology against state-of-the-art Poincare and Lorentz baselines using datasets for Schizophrenia, Parkinsons Disease, and Alzheimers Disease. The Klein-based framework demonstrates superior performance, delivering both higher diagnostic precision and accelerated processing velocities across all three neurocognitive disorders.

As machine learning and artificial intelligence systems are increasingly used in healthcare, rigorous evaluation of their classification performance has become critical. The F1 and F{beta} scores are widely adopted metrics for assessing performance in imbalanced biomedical data. Recently, we introduced psF1, a unified statistical framework for inference and study design for single and comparative F1 and F{beta} scores under the assumption of independent classifiers. In practice, however, benchmarking two classifiers on the same dataset creates a correlated paired setting. Ignoring this intrinsic dependency leads to overestimation of the standard error and a substantial loss of statistical power. To address this, we develop psF1pair, an advanced framework for statistical inference and power analysis that explicitly accounts for correlations between classifier pairs. Extensive simulation studies demonstrate the performance of psF1pair, and its utility is further illustrated through application to a real-world imaging classification system. As expected, higher correlation between classifiers yields narrower confidence intervals and enhanced statistical power. A freely available R package is provided to facilitate implementation, supporting accurate evaluation and study design for predictive and classification models in biomedical research.

White matter lesion (WML) identification, assessment, and characterization using magnetic resonance imaging (MRI) are fundamental for diagnosis and monitoring of multiple sclerosis (MS). Portable ultra-low field (pULF) MRI at 64 millitesla (mT) has been shown to visualize WML with at least one dimension greater than 4 mm. An automated WML segmentation tool catered to pULF-MRI can provide standardized and accurate quantitative measurements of WML volume. In this study, we sought to investigate and compare the accuracy of machine-learning (ML) and deep-learning (DL) pULF MRI segmentation tools. Same-day paired pULF (64mT) and high-field (HF, 3T) MRI scans from 84 adults with MS or suspected-MS (mean age {+/-} SD: 48 {+/-} 13, 62 females) included T2-FLAIR and T1w images. Reference WML segmentations were manually annotated on pULF T2-FLAIR for all scans, with WML confirmed with registered HF T2-FLAIR. HF reference WML segmentations were created. Four automated segmentation methods were applied to pULF scans: Method for Inter-Modal Segmentation Analysis (MIMoSA), an ML algorithm trained on HF WML masks; WMH-SynthSeg, a convolutional neural network model with flexible segmentation capabilities across field strengths and resolution; nnU-Net, a DL algorithm trained on pULF reference WML masks; and Pseudo-Label Assisted nnU-Net (PLAn), a DL algorithm pre-trained on HF reference WML masks and refined with 64mT reference WML masks. Two models were trained with nnU-Net, one using T2-FLAIR images only (nnU-Net-FL) and one using T1w and T2-FLAIR images (nnU-Net-FL/T1). The same was done with PLAn, creating PLAn-FL and PLAn-FL/T1. The six automated WML segmentation outputs were compared to the manual segmentations to determine Dice Similarity Coefficient (DSC) scores. Associations of WML volume estimates with clinical measures were investigated. DSC scores with pULF reference WML masks from PLAn-FL (DSC mean {+/-} SD: 0.50 {+/-} 0.24) outperformed MIMoSA (0.24 {+/-} 0.20, p < 0.0001), WMH-SynthSeg (0.30 {+/-} 0.18, p < 0.0001), nnU-Net-FL (0.41 {+/-} 0.24, p < 0.0001), and nnU-Net-FL/T1 (0.41 {+/-} 0.26, p = 0.0004). Worse Expanded Disability Status Scale (EDSS) and Scripps Neurologic Rating Scale (SNRS) scores were correlated with higher WML volumes in the pULF and HF reference masks. They were also correlated with WML volumes derived from WHM-SynthSeg, nnU-Net-FL, nnU-Net-FL/T1, PLAn-FL, and PLAn-FL/T1, but not MIMoSA. After adjusting for age, WHM-SynthSeg, nnU-Net FL, nnU-Net-FL/T1, PLAn-FL, and PLAn-FL/T1 had significant associations with EDSS and SNRS scores. nnU-Net and PLAn performed best in segmenting WML on pULF-MRI at 64 mT, providing accurate quantitative estimates of WML burden. Moreover, WML volumes estimated by these algorithms were associated with clinical measures of disability, underscoring their utility for reflecting clinical and radiological disease severity. Given pULF-MRI's mobility and lower cost, these findings highlight its relevance in clinical trials, particularly in involving more participants who face logistical constraints and barriers.

Introduction: The Diabetes Prevention Program Outcomes Study (DPPOS) is an established cohort of aging persons with pre-diabetes and type 2 diabetes with 25 years of median follow-up. In 2022 DPPOS added Alzheimer's disease (AD), and AD related dementias (ADRD) phenotyping using the National Alzheimer's Coordinating Center (NACC) Uniform Data Set (UDSv3), which included a standardized neurological examination across 25 clinical sites, administered by clinical staff and interpreted centrally by clinicians. Methods: A DPPOS video-based asynchronous neurological examination (DPPOS-VANE) was developed iteratively through consensus from research clinicians and staff feedback to harmonize with UDSv3 to identify common neurological diagnoses aside from dementia including diabetic cranial neuropathies, stroke and parkinsonism. DPPOS-VANE was designed to be conducted without direct participant contact by the examiner, reproducible, and independent of clinical skills of PCs. An iPad camera recorded the video exam, comprised of assessments of extraocular and facial movements, visual fields, speech, gross motor strength, pronator drift, praxis and parkinsonism. A 10-minute training video demonstrated the examination step-by-step with scripts and instructions in English and Spanish. Site-specific performance review, feedback, and staff certification preceded central reading of video recordings by physicians. After two years of implementation, 1286 DPPOS-VANEs led to 1284 examination reviews. Of these, 1204 (93%) were completed by having the examiner follow the standard script. Overall, 1237 examinations (96%) were delivered as planned, 41 (3%) had minor errors but were still usable, and 6 (0.4%) had major deviations in exam technique; two additional recorded evaluations were not usable as recorded videos were inaccessible due to technical errors. Each examination was completed within 10-15 minutes. Each site on average completed 51.4 examinations (range 14-92). Discussion: Engaging 55 research staff across 25 sites and 3 physician-reviewers, this study is the first to demonstrate feasibility of a VANE as an efficient neurological examination model enabled by commonly used devices. Such a multisite standardized VANE represents a novel paradigm for large epidemiological studies.

INTRODUCTION: The Diabetes Prevention Program (DPP) was a randomized clinical trial designed to prevent type 2 diabetes (T2D) in adults with prediabetes. The DPP Outcomes Study (DPPOS) is the 30-year follow-up of this cohort, focusing on T2D, prediabetes, and related complications. Cognitive assessments began in 2009 and expanded in 2022 to examine cognitive impairment, including Alzheimer's disease (AD) and AD related dementias (ADRD), in the surviving cohort. To support these aims, the National Alzheimer's Coordinating Center Uniform Data Set version 3 (NACC-UDSv3), the standardized framework used by Alzheimer's Disease Research Centers, was implemented in DPPOS in 2022 to enable data sharing with NACC. These forms were complemented by cognitive tests administered in DPPOS. We aimed to integrate the NACC-UDSv3 into the existing longitudinal DPPOS framework while maintaining fidelity to its structure and developing automated reports to streamline cognitive outcomes adjudication. METHODS: Items from the 16 NACC-UDSv3 data forms were compared with those already collected within DPPOS to integrate overlapping similar items, add missing NACC-UDSv3 items, and create a dataset harmonized with NACC-UDSv3. Forms were adapted for electronic data capture (EDC) using the MIDAS (Multimodal Integrated Data Acquisition System, George Washington University). Automated reports integrated current and prior neuropsychological scores to support adjudications. In the first wave of the DPPOS-AD/ADRD study, 1561 cognitive adjudications were successfully completed using the harmonized DPPOS and NACC-UDSv3 data implemented into MIDAS. DISCUSSION: The DPPOS-AD/ADRD project demonstrated that NACC-UDSv3 can be successfully integrated into a long-standing longitudinal cohort not originally designed for AD/ADRD research. The harmonization, electronic capture, and automated adjudication processes may provide a practical framework for other cohorts seeking to incorporate NACC-UDSv3 to align with national AD/ADRD research standards.

Automated interpretation of neuroimaging studies requires simultaneous assessment of multiple imaging evidence variables, each tied to distinct anatomical structures. Vision-language models (VLMs) offer a unified framework for multi-task analysis, but adapting pre-trained VLMs remains challenging. Full fine-tuning is computationally prohibitive, and joint multi-task training requires simultaneous access to all task data, which is often infeasible in clinical settings. Although model merging enables multi-task composition without joint re-training, existing methods focus on post-hoc algorithms with limited extension to VLMs and minimal application to neuroimaging. Here, we present GRadient-guided Adapter Merging (GRAM), a layer-selective low-rank adaptation (LoRA)-based fine-tuning and merging framework for multi-task neuroimaging visual question-answering (VQA). GRAM uses a gradient ratio that contrasts class-specific gradients to identify task-discriminative layers, and applies subspace-constrained projected gradient descent to restrict LoRA updates to directions consistent with the geometry of the pre-trained model. We leveraged a structured VQA benchmark, developed from the National Alzheimer's Coordinating Center (NACC) dataset, that pairs multi-sequence brain MRI studies with question-answer pairs across clinically relevant imaging evidence variables. Experiments on the VQA benchmark showed that GRAM outperformed or matched all-layer LoRA fine-tuning and a standard merging baseline while reducing inter-task interference during merging, and approached or surpassed the performance of joint multi-task training without joint re-training.

The apnea-hypopnea index (AHI), the conventional metric of obstructive sleep apnea (OSA) severity, is typically studied using scalar summaries of sleep architecture, such as the total time spent in each sleep stage. Although clinically interpretable, these summaries fail to capture the temporal organization of overnight sleep-stage sequences and may obscure stage-specific associations with OSA severity. Modeling the complete sleep-stage trajectory provides substantially richer temporal information; however, because total sleep duration varies across individuals, sleep-stage trajectories are observed over subject-specific domains, limiting the applicability of conventional functional regression methods that assume a common observation interval. We therefore applied Variable-Domain Functional Regression (VDFR) to overnight polysomnographic data from the APPLES study (n= 1,103), treating the epoch-by-epoch sleep-stage sequence as a continuous, variable-length functional predictor of AHI. We compared three levels of sleep-stage granularity: five stages (Wakefulness, N1, N2, N3, REM), three stages (Wakefulness, Non-REM, REM), and binary staging (Wakefulness vs. Sleep). Functional sleep-stage terms were significant across all staging granularities and model structures (all p-values [&le;]0.001). Wake, N1, and N2 were positively associated with AHI, whereas N3 and REM were negatively associated, with REM exhibiting the strongest association. These effects were attenuated under coarser staging representations, highlighting the importance of preserving fine-grained sleep architecture. To our knowledge, this is the first application of VDFR to overnight polysomnographic data in OSA, showing that accommodating subject-specific sleep durations enables the identification of stage-specific temporal associations with AHI severity that are attenuated or obscured by coarser staging and conventional scalar analyses.

Multimodal imaging approaches that combine structural and functional neuroimaging provide a robust framework for examining neuroplastic adaptations that may not be captured by any single modality. The present study investigated the effects of a four-week expiratory muscle strength training (EMST) program on structural and resting-state functional connectivity in healthy young adults. Five healthy young adult males (aged 19-35 years) completed a standard four-week EMST protocol and underwent pre- and post-training imaging assessments. Structural neuroimaging included T1-weighted and diffusion-weighted MRI, which were analyzed using voxel-based morphometry, surface-based morphometry, and white-matter structural connectivity. Functional neuroimaging consisted of resting-state fMRI to assess training-related changes in functional architecture, network connectivity, and global network measures. Structural MRI analyses revealed no significant changes in gray or white matter volume, cortical morphology, or white-matter structural connectivity following EMST (all FWE- or FDR-corrected p > .05). In contrast, resting-state fMRI demonstrated a significant increase in whole-brain functional connectivity (FDR-corrected p = .036), accompanied by greater network integration, reflected in increased local efficiency and transitivity and reduced modularity. Network-level analyses showed enhanced within- and between-network connectivity in sensorimotor and cognitive circuits. Our findings demonstrate robust functional reorganization following EMST, despite the absence of detectable macrostructural or large-scale white-matter connectivity changes, at least within the timescale and sample characteristics of the current study. These results reflect early-stage neuroplasticity, both globally and within the networks underlying speech and swallowing control and suggest that functional reorganization occurs early in training and likely precedes longer-term structural modifications in these networks.

Importance: Alzheimer's disease (AD) arises from complex interactions among genetic, clinical, and social determinants of health (SDoH) risk factors, yet their independent contributions to underlying AD pathophysiology remain elusive. Objective: To quantify the effects of risk factors across amyloid (A{beta})/tau, neurodegeneration, and cognition. Design: Cross-sectional analysis using structural equation modeling (SEM). Setting: Health and Aging Brain Study-Health Disparities (HABS-HD), a community-based cohort study. Participants: A total of 2,276 participants with demographics, genetic, clinical, and biomarker data from the baseline visit. Exposures: APOE e4 carrier status, AD polygenic risk score (AD-PRS), clinical risk score (CogDRisk), and a social determinants of health (SDoH) latent score derived using factor analysis. Main Outcomes and Measures: Latent variables representing A{beta}/tau pathology (plasma pTau181, plasma pTau217/A{beta}42, amyloid PET positivity, and global standardized uptake value ratio), neurodegeneration (plasma neurofilament light, cortical thickness, hippocampal volume), and cognition (memory, executive, and language tests) were modeled and regressed on AD latent variables using SEM adjusted for age, sex, genetic principal components, and spoken language. Results: The total analytic sample included 2,276 participants (mean age: 65.3 {+/-} 8.7; non-Hispanic White: 43.0%, non-Hispanic Black: 16.2%, and Latinx/Hispanic adults: 40.8%). APOE e4 was strongly associated with worse A{beta}/tau latent variable ({beta}=0.31; p<0.001), with smaller but significant associations with neurodegeneration ({beta}=0.085; p<0.001) and cognition ({beta}=0.083; p<0.001). Higher AD-PRS was modestly associated with worse A{beta}/tau ({beta}=0.075; p<0.01) but was not associated with neurodegeneration or cognition. A higher clinical risk score was significantly associated with worse neurodegeneration ({beta}=0.16; p<0.001) but not with A{beta}/tau or cognition. Adverse SDoH was associated with worse neurodegeneration ({beta}=0.071; p<0.05) and strongly associated with worse cognition ({beta}=0.22; p<0.001), with no associations with A{beta}/tau. Conclusion and Relevance: Genetic risks were primarily associated with A{beta} and tau pathology, clinical risks with neurodegeneration, and SDoH risks with cognition, suggesting that risk factors exert differential effects on AD pathophysiology. Future studies investigating additional risk factors and their longitudinal associations with AD pathophysiological changes are warranted.

People with Down syndrome have higher age-specific mortality rates compared to the general population as well as peers with other intellectual and developmental disabilities. While a large proportion of mortality is attributable to Alzheimers disease, many die prior to Alzheimers diagnosis and some live to old ages, dying without Alzheimers. Our objectives were to use 11 years of Medicaid and Medicare data to describe characteristics and factors related to death in adults with Down syndrome and use machine learning to identify which conditions most strongly predict death in the full population and stratified by age. We identified death using Center for Medicare and Medicaid Systems reported date of death health conditions using ICD 9 and 10 codes. We used a case-control design with risk set sampling to have that controls to mimic the distribution of times of incident Alzheimers disease. We trained gradient boosted trees to identify strongest predictors. Our cohort included 137,293 adults with Down syndrome. Among those, 30,894 (22.5%) died during the study period. Mean age at death among those who died was 55 years (SD=10). Mean age of death in those with Alzheimers disease was 59 (SD=7) and those without was 52 (SD=12). The most influential predictors of mortality were any claim for dementia, any claim for pneumonia, re-occurring claim for cardiovascular disease three years before index death, and any claim for heart failure and epilepsy. Our results align with previous clinical work and highlight intervenable areas to reduce mortality in the Down syndrome population.

Background: Post-traumatic stress disorder (PTSD) remains highly prevalent affecting ~23% of World Trade Center (WTC) responders more than two decades after 9/11. While MRI studies have identified neural differences associated with PTSD, these findings have not translated into improved treatment. We introduce a novel multimodal MRI approach, DAta-driven Network Connectivity Estimate (DANCE), integrating structural and functional magnetic resonance imaging (MRI) to better capture PTSD mechanisms and inform biomarkers. Methods: In 96 WTC responders , including 45 with current WTC-related PTSD and 51 without PTSD. We applied graph theory to resting-state functional MRI to identify functional hubs via eigenvector centrality and identified divergence between groups using partial least squares discriminant analysis (PLS-DA). From diffusion MRI, we reconstructed five anatomical tracts (i.e., streamlines) in the temporal lobes. Using DANCE, we quantified the differential distribution of streamlines of the reconstructed tracts connecting the functional hubs. We then tested whether WTC exposure duration moderated associations between PTSD and DANCE indices. Results: Responders with PTSD showed altered centrality in nine functional hubs (AUC=0.75 (0.651-0.847)) including bilateral anterior inferior temporal gyrus, right superior parietal lobule, right anterior parahippocampal gyrus, right anterior/posterior superior temporal gyrus (STG), right caudate nucleus, left amygdala and brainstem. Connectivity differences emerged in four tracts: hippocampus, parahippocampus, inferior and superior temporal gyri (STG). DANCE differed in the inferior fronto-occipital fasciculus (IFOF), medial (IFLmed) and lateral (IFLlat) components of the inferior longitudinal fasciculus and in the middle longitudinal fascicle (MdLF). WTC exposure duration significantly moderated the association between PTSD and DANCE values in the IFLmed, right posterior STG (p= 0.035). Conclusion: Our novel DANCE approach revealed converging functional and anatomical connectivity alterations uniquely associated with PTSD in WTC responders and offers compelling evidence for distinct neurobiological signatures of the disorder. These findings significantly advance our understanding of PTSD pathophysiology and highlight potential biomarkers for diagnosis and targeted intervention.

This study presents ReCo (Research Cosmos), a self-configuring and self-extending agentic research framework for the biomedical domain. ReCo is orchestrated by a large language model that interacts with native computing tools, bundled Model Context Protocol (MCP) servers, structured skills, persistent project memory, and a desktop interface. Its bundled MCP servers provide biomedical analysis capabilities while serving as implementation paradigms for integrating new computational and AI frameworks. Structured skills encode procedures for environment configuration and framework ingestion, enabling ReCo to inspect repositories, manuscripts, or local codebases; identify dependencies and execution patterns; create isolated runtime environments; design and implement MCP interfaces. Self-extension was evaluated using five heterogeneous systems: the Merlin computed tomography foundation model, MAISI-v2 medical image synthesis framework, asari liquid chromatography-mass spectrometry workflow, DosimeTron agentic radiation-dosimetry platform, and Orthanc DICOM server. ReCo successfully operationalized all five systems and completed predefined functional evaluations. Re-hosted DosimeTron outputs demonstrated near-perfect agreement with the reference pipeline across 651 organ observations (Pearson correlation and Lin concordance correlation coefficient, 0.99999; mean absolute percentage difference, 0.37%). Notably, ReCo configured Orthanc as a PACS-like coordination layer, integrated it with DosimeTron, Merlin, and TotalSegmentator, and orchestrated data retrieval, analysis, and return of valid DICOM RTSTRUCT, RTDOSE, and Structured Report. ReCo provides a unified environment for configuring, documenting, and operationalizing heterogeneous biomedical frameworks, reducing technical barriers to the adoption and integration of emerging computational and AI methods. The official open-source ReCo GitHub repository is available at: https://github.com/eltzanis/ReCo

Background: previous research has demonstrated a relationship between chronically elevated postabsorptive amino acid (AA) levels and the pathophysiology of neurological disorders such as dementia. It is unclear if some of these associations are causal or secondary to other pathologies. Amino acid metabolism also has a complex relationship with glycaemia, which itself may be implicated in brain health and the aetiology of dementia. Study design: we implemented a two-sample Mendelian randomisation (MR) in the UK Biobank (maximum N=375,078 participants) utilising exposure data from a recent genome-wide association study (GWAS) of circulating metabolites. Both univariate and multivariable MR methods were implemented, complemented by standard sensitivity analyses using the weighted median estimator, Egger regression, and MR-PRESSO. Our exposures were genetic instruments proxying elevated levels of the branched chain AAs (BCAAs; isoleucine, leucine, and valine), aromatic AAs (AAAs; phenylalanine, tyrosine, and histidine), and glycated haemoglobin A1c (HbA1c). Our outcomes were subcortical volume measures (of the accumbens, amygdala, caudate, hippocampus, pallidum, putamen, and thalamus); total brain and white matter hyperintensity (WMH) volumes; and all-cause dementia (ACD), vascular dementia (VaD), and Alzheimer's dementia (AD). Results: we found evidence of direct associations independent of glycaemia between genetically-proxied elevated circulating tyrosine and multiple subcortical volumes of the accumbens ( {beta} = 11.0 95%CI [4.2, 17.8] mm3 / mmol L-1), caudate ({beta} = 30 95% CI [2.9, 5.71] mm3 / mmol L-1), hippocampus ({beta} = 43.1 95%CI [14.1, 72.1] mm3 / mmol L-1), and thalamus ({beta}= 81.4 95%CI [8.54, 154.3] mm3 / mmol L-1). For dementia outcomes, elevated valine and histidine were associated with a reduced (OR = 0.45 95% CI [0.21, 0.96] / mmol L-1) and increased (OR = 1.47 95% CI [1.03, 2.09] / mmol L-1) vascular dementia risk, respectively. Conclusions: elevated circulating tyrosine was associated with increases in several subcortical volumes, and these effects were found to be independent of glycaemia. This warrants further investigation as to the effects and possible benefits of tyrosine modification or supplementation in the diet to protect against brain atrophy and the development of neurological disorders. On the other hand, associations between circulating AAs and vascular dementia may indicate mechanistic effects of chronically elevated AA levels on dementia.

Introduction Systematic review authors commonly encounter situations where the data required for meta-analysis are incompletely reported (e.g. when effect estimates are reported without a measure of precision). In this circumstance, many systematic review authors use a method other than meta-analysis (e.g. vote counting), but rarely describe those methods or the rationale for selecting them. We aimed to investigate what methods authors consider when meta-analysis of all study results is not possible, and what factors influence their decisions. Methods We interviewed 12 experienced systematic review authors, editors and methodologists, presenting four scenarios in which it was not possible to combine all results using meta-analysis. Scenarios varied in the number and size of included studies, available data, and risk of bias. Participants discussed the methods they considered to summarise, synthesise and present the results; whether they would synthesise available results; and how they would draw overall conclusions. Results Factors that informed decisions included participants' overall purpose in conducting synthesis, existing beliefs about study results and synthesis methods, trust in the available data, and the decision-making needs of end users. Participants differed in which synthesis methods to use, whether they would use multiple synthesis methods, and which studies they would analyse with each method. Conclusions We identified several synthesis methods considered when meta-analysis of all results is not possible, and factors that influence the selection of methods, neither of which are routinely reported. More complete reporting of these methods and the factors informing decisions would allow readers to better understand the decisions made.

Causal effect estimates can often be biased in clinical and epidemiological studies as patient cohorts frequently exhibit substantial covariate imbalances between treated and control groups, often amplified in multicentre studies due to heterogeneous recruitment, clinical practice, and case mix. Covariate balancing methods are therefore essential for valid causal inference. However, their application becomes challenging when data are distributed across cohorts and cannot be pooled because of privacy, legal, or institutional constraints, leaving a gap in practical methods for causal effect estimation in federated and imbalanced clinical data settings. We develop a privacy-preserving framework for covariate balancing and causal effect estimation across distributed data providers, combining federated aggregation with differential privacy to enable propensity score subclassification and matching without sharing individual-level records. Matching relies on non-disclosive quantities and differentially private distance evaluation, and the resulting matched subsets remain local to each server. Balance can be assessed through federated diagnostics and privacy-preserving visualisations, and we provide secure estimators for average treatment effects with associated uncertainty quantification. We implement this framework in the DataSHIELD federated analysis platform via 2 R packages. In simulations, we demonstrate agreement between federated and centralised analyses in the absence of privacy noise and quantify the bias--variance trade-offs induced by differential privacy. We illustrate applicability in two multinational settings-a Long COVID cohort and very preterm birth cohorts-showing that the approach enables practical causal analyses under real-world data protection constraints. The DataSHIELD packages are available on Github. Additional methodological details are provided in the Supplementary Material.

Intracranial neurophysiology studies have typically ignored signals from electrodes located in white matter (WM), assuming that their information content is artifactual or related to nearby gray matter (GM). Here, we tested the electrophysiological and functional features of signals recorded from different WM locations. Signals were recorded from 19 patients undergoing intracranial monitoring for drug-resistant epilepsy by means of stereo-electroencephalography (sEEG). Each sEEG electrode was classified into WM or GM based on the surrounding tissue. We obtained recordings from a total of 1,717 sEEG electrode contacts, 36% in WM, while the patients were in awake resting state (5 minutes). For each sEEG electrode, we employed a model-based spectral decomposition to separate periodic and aperiodic components, and we computed signal complexity metrics. For a subset of participants, we computed WM structural information from diffusion-weighted magnetic resonance imaging and we evaluated functional signals during a cognitive control task. Our results show that signals recorded from WM have different spectral features and higher complexity than GM. Complexity correlates positively with fractional anisotropy, and modulations related to behavior during the task were detected in WM. Overall, this indicates that WM signals carry information that may reflect signal propagation across WM fiber tracts.

Purpose: To develop an accelerated motion-compensated diffusion-weighted pseudo-continuous arterial spin labeling (MCDW-pCASL) method using a spatial subspace low-rank reconstruction method for efficient quantification of blood-brain barrier (BBB) water exchange (kw) and permeability (PSw). Methods: An accelerated multidelay MCDW-pCASL sequence was developed to simultaneously encode intravascular and extravascular diffusion-weighted ASL signals across multiple post-labeling delays (PLDs). A spatial subspace low-rank reconstruction framework was optimized to enable joint estimation of cerebral blood flow (CBF) and BBB water exchange rate and permeability. Fourteen young healthy adults underwent test-retest scans (separated by ~1 week) at 3T with both the accelerated MCDW-pCASL and a conventional diffusion-prepared (DP) pCASL sequence. Whole-brain, gray-matter, and white-matter CBF and kw values were quantified to assess test-retest repeatability and cross-method agreement. An additional cohort of 30 older adults underwent single-session MCDW and DP scans to evaluate age-related perfusion and BBB kw/PSw differences. Intraclass correlation coefficients (ICCs) were used to assess reliability and agreement. Results: Accelerated MCDW-pCASL demonstrated excellent agreement with DP-pCASL for CBF (ICC = 0.89) and fair agreement for kw (ICC = 0.56). Test-retest repeatability of MCDW-pCASL was good for CBF, BBB kw and PSw (ICC {approx} 0.6). Across both sequences, younger subjects exhibited significantly higher CBF and kw compared with older adults. Conclusion: Incorporating a spatial low-rank subspace reconstruction enables accelerated MCDW-pCASL acquisition with reliable simultaneous quantification of CBF, BBB kw and PSw. Clinical applications of this method for assessing perfusion and BBB function are warranted.

ABSTRACT Background: Metallic implants such as orthopedic screws, prostheses, and dental hardware produce beam-hardening, photon-starvation, and streak artifacts that degrade computed tomography (CT) image quality, and the metal artifact reduction (MAR) methods developed to mitigate them require objective, reproducible benchmarking. Purpose: Objective evaluation of MAR algorithms in CT is hindered by the absence of phantoms that simultaneously provide anatomically realistic backgrounds, embedded implants of known geometry, and controllable, ground-truth--referenced artifact intensity. We present a dual-filament, voxel-level three-dimensional (3D) printing method that fulfills these requirements and demonstrate its capabilities on a clinically representative cervical spine case with embedded orthopedic spinal screws. Methods: The proposed method extends the PixelPrint framework, a fused-deposition-modeling (FDM) workflow that converts clinical Digital Imaging and Communications in Medicine (DICOM) data directly into 3D-printer Geometric code (G-code) without intermediate segmentation or surface meshing, to interleaved, voxel-level deposition of two filaments: a calcium-doped polylactic acid (PLA) for soft tissue and bone, and a higher-attenuation metal-doped PLA for metallic implants. For demonstration, anonymized DICOM data of a healthy cervical spine were used to design and fabricate three matched phantoms, each with six embedded spinal screws at C4--C6: a 0% metal-infill ground-truth phantom, a 50% medium-metal-infill phantom, and an 85% high-metal-infill phantom. All phantoms were scanned on a clinical spectral CT system at 120 kVp and 1000 mAs, reconstructed at 0.67 mm slice thickness with virtual monoenergetic imaging (VMI) across 50--190 keV. Method performance was characterized by region of interest (ROI)-based Hounsfield Unit (HU) agreement with the source patient data and by the noise-independent Gumbel-distribution p-index metric. Results: The dual-filament method reproduced patient anatomy, soft-tissue contrast, and screw geometry with high fidelity. ROI HU values agreed with patient data within {+/-}25 HU for soft tissue and trabecular bone; cortical regions were underestimated owing to the current ceiling of the calcium-doped PLA used in this study. The tunable-artifact behavior was quantified as follows: the Gumbel location parameter scaled monotonically from 46.7 HU (no-metal background) to 57.1 HU (50% infill) to 90.5 HU (85% infill) for the VMI 70 keV with standard filter. High-keV VMI reconstructions substantially reduced streak and beam-hardening artifacts while preserving anatomic detail. Conclusions: The proposed dual-filament, voxel-level PixelPrint method enables the fabrication of patient-specific, multi-material CT phantoms with embedded metallic implants and controllable, ground-truth--referenced artifact intensity. Although demonstrated here in a single cervical-spine case, the workflow is anatomy- and implant-agnostic by construction and could in principle be adapted to other musculoskeletal sites (e.g., knee, hip, dental) and implant materials, providing a reproducible methodological foundation for benchmarking MAR algorithms, characterizing spectral CT performance, and validating emerging photon-counting detector systems. Keywords: 3D printing methodology; fused deposition modeling; voxel-level multi-material printing; spectral computed tomography; metal artifact reduction; phantom design; orthopedic implants; dual filament; PixelPrint.

This study focuses on the relationship between access to Advanced Neonatal Care (ANC) and fertility across the regions in Ghana between 1988 and 2022. It builds on previous studies focused on inequity in maternal health across subnational levels and incorporates spatial analytics, machine learning, and a welfare-adjusted fertility care metric. Nine waves of the Ghana Demographic and Health Survey (DHS) were analyzed, with 94 region-by-year units across 8 to 16 regions in each survey wave in the 16 Ghana administrative regions. Skilled ANC along with the Total Fertility Rate (TFR) and demographic control variables were extracted for the analysis. The methodologies employed include decomposition of the Gini coefficient of inequality, bivariate z-score risk stratification, Random Forest (RF), and Decision Tree (DT) regression, partial dependence, Local Indicators of Spatial Association (LISA), global Moran's I with permutation inference and a novel Care Efficiency Index (CEI = ANC% / TFR). Care for the outcomes employed region aggregations along with district boundary geometries for the display of the choropleth maps. National skilled ANC coverage increased from 83.1% (1988) to 97.7% (2022), with inter-regional Gini declining 87.9% (0.070 to 0.008). The North-South gap narrowed from 32.4 to 0.9 percentage points. Northern region showed the greatest absolute gain (+43.0pp). Machine learning identified an exploratory RF partial-dependence inflection near TFR=5.90, above which predicted ANC coverage declined in the historical data. Survey year was the dominant RF predictor (43.7%), followed by TFR (38.8%). TFR spatial clustering intensified by 2022 (Moran's I=0.606, p=0.001). Greater Accra led the Care Efficiency Index (CEI=31.9); Northern Belt regions lagged (CEI=14.5-16.5). Risk stratification classified 23 observations as Critical (Low ANC/High TFR), predominantly from Northern Belt regions in earlier survey waves. ANC coverage converged substantially, yet fertility-related spatial inequities persisted, especially in the Northern Belt. The Care Efficiency Index and exploratory TFR inflection provide hypothesis-generating tools for targeting health-system investment. They should not be interpreted as causal thresholds.